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Commit a134fc35 authored by Robbert's avatar Robbert
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Merge branch '1-initial-version-of-data-science-template' into 'master' 

Resolve "Initial version of Data Science template"

Closes #1

See merge request !1
parents d3fd9f3b ec98b6d1
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.editorconfig 0 → 100644
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# editorconfig.org
root = true
[*]
indent_style = space
indent_size = 4
tab_width = 4
end_of_line = lf
charset = utf-8
trim_trailing_whitespace = true
insert_final_newline = true
max_line_length = 79
[*.yml]
indent_size = 2
[*.md]
trim_trailing_whitespace = false
[*.bat]
indent_style = tab
end_of_line = crlf
[LICENSE]
insert_final_newline = false
[Makefile]
indent_style = tab
.gitignore 0 → 100644
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# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
# C extensions
*.so
# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
# Translations
*.mo
*.pot
# Django stuff:
*.log
# Sphinx documentation
docs/_build/
# PyBuilder
target/
# DotEnv configuration
.env
# Database
*.db
*.rdb
# Pycharm
.idea
# VS Code
.vscode/
# Spyder
.spyproject/
# Jupyter NB Checkpoints
.ipynb_checkpoints/
# exclude data from source control by default
data/*
# Mac OS-specific storage files
.DS_Store
# vim
*.swp
*.swo
# Mypy cache
.mypy_cache/
HISTORY.md 0 → 100644
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# History
## 0.1.0 (2020-07-15)
* First release of AskAnna Data Science template
cookiecutter.json 0 → 100644
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{
"project_name": "The name of the project",
"project_directory": "The name of the directory you want to create for the project",
"project_description": "A (short) description of the project",
"project_push_target": "[OPTIONAL] copy the URL from the project in AskAnna"
}
{{ cookiecutter.project_directory }}/.env 0 → 100644
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# Environment variables go here and can be read by `python-dotenv` package.
#
# To load the variables, you can use the script below as an example.
#
# `script.py`
# ----------------------------------------------------------------
# import os
# from dotenv import find_dotenv, load_dotenv
#
# # Find .env automagically by walking up directories until it's found, then
# # load up the .env entries as environment variables
# load_dotenv(find_dotenv())
#
# example = os.getenv('EXAMPLE')
# ----------------------------------------------------------------
#
# IN CASE OF SENSITIVE INFORMATION: DO NOT ADD THIS FILE TO VERSION CONTROL!
EXAMPLE = 'test'
{{ cookiecutter.project_directory }}/.gitignore 0 → 100644
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# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
# C extensions
*.so
# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
# Translations
*.mo
*.pot
# Django stuff:
*.log
# Sphinx documentation
docs/_build/
# PyBuilder
target/
# DotEnv configuration
.env
# Database
*.db
*.rdb
# Pycharm
.idea
# VS Code
.vscode/
# Spyder
.spyproject/
# Jupyter NB Checkpoints
.ipynb_checkpoints/
# exclude data from source control by default
data/*
# exclude result from source control by default
result/*
# Mac OS-specific storage files
.DS_Store
# vim
*.swp
*.swo
# Mypy cache
.mypy_cache/
{{ cookiecutter.project_directory }}/README.md 0 → 100644
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# {{ cookiecutter.project_name }}
{{ cookiecutter.project_description }}
## Project Organization
├── askanna.yml <- Configuration file for AskAnna
├── requirements.txt <- The requirements file for reproducing the analysis environment, e.g.
│ generated with `pip freeze > requirements.txt`
├── data
│   ├── input <- The original, immutable data (dump)
│   ├── interim <- Intermediate data sets
│   └── processed <- The final prepped data sets for modeling
│
├── docs <- Add Markdown project documentation here (see also section
| 'Introduction of Docs')
│
├── models <- Trained and serialized models, model predictions, or model summaries
│
├── notebooks <- A location for your project related Jupyter notebooks
│
├── result <- A location for your project related results
│
├── src <- Source code for use in this project
│   ├── __init__.py <- Makes code a Python module
│ │
│   ├── data <- Scripts to download or generate data
│ │ ├── create_dataset.py
│   │   └── create_features.py
│ │
│   └── models <- Scripts to train models and then use trained models to serve a result
│      ├── serve_model.py
│      └── train_model.py
│
├── .env <- Environment file for local development
├── .gitignore <- Files or directories that should not be pushed to AskAnna
└── README.md <- This document
## Introduction of Docs
This template documentation can be used to add documentation to your project.
You only have to clone (or download) the repository and copy the `docs` folder
to your project. Optionally you can also copy the .gitignore file as well.
The documentation is based on [Docsify](https://docsify.js.org/). Check out
their page for more information, configuration options and plugins.
### Run it locally
If you want to view this project locally, you need a local webserver. The
fastest way is by using Python. Instructions for Python 3.x:
```bash
cd docs && python -m http.server 3000
```
You can also use the Docsify CLI. First install **Node.js**:
[package manager overview](https://nodejs.org/en/download/package-manager/)
Then install Docsify:
```bash
npm i docsify-cli -g
```
And you can run the local server:
```bash
docsify serve docs
```
## Credits
This data science template is inspired by [Cookiecutter Data Science](https://drivendata.github.io/cookiecutter-data-science/).
{{ cookiecutter.project_directory }}/askanna.yml 0 → 100644
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---
push-target: {% if cookiecutter.project_push_target != "[OPTIONAL] copy the URL from the project in AskAnna" %}{{ cookiecutter.project_push_target }}{% endif %}
environment: Python 3.7
train-model:
job:
- pip install requirements.txt
- python src/models/train_model.py
output:
- models/
serve-model:
job:
- pip install requirements.txt
- python src/models/serve_model.py
result: result/prediction.json
output:
- notebooks/validation
{{ cookiecutter.project_directory }}/docs/README.md 0 → 120000
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../README.md
\ No newline at end of file
{{ cookiecutter.project_directory }}/docs/index.html 0 → 100644
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<title>Documentation {{ cookiecutter.project_name }}</title>
<link rel="icon" type="image/png" sizes="32x32" href="media/askanna-icon-32x32.png" />
<link rel="icon" type="image/png" sizes="16x16" href="media/askanna-icon-16x16.png" />
<meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1" />
<meta name="description" content="{{ cookiecutter.project_description }}" />
<meta name="viewport" content="width=device-width, user-scalable=no, initial-scale=1.0, maximum-scale=1.0, minimum-scale=1.0">
<link rel="stylesheet" href="//cdn.jsdelivr.net/npm/docsify-themeable@0/dist/css/theme-simple.css">
<head>
<body>
<div id="app"></div>
<script>
window.$docsify = {
name: 'Documentation {{ cookiecutter.project_name }}',
logo: 'media/askanna-logo.svg',
themeColor: '#5D3EB3',
// NAVIGATION
loadSidebar: 'sidebar.md',
maxLevel : 3,
subMaxLevel: 3,
// PLUGINS
search: {
depth : 3,
},
pagination: {
crossChapter: true,
},
}
</script>
<script src="//cdn.jsdelivr.net/npm/docsify/lib/docsify.min.js"></script>
<script src="//cdn.jsdelivr.net/npm/docsify-themeable@0"></script>
<!-- Plugin for search -->
<script src="//cdn.jsdelivr.net/npm/docsify/lib/plugins/search.min.js"></script>
<!-- Plugin for pagination -->
<script src="//unpkg.com/docsify-pagination/dist/docsify-pagination.min.js"></script>
<!-- Plugin for Mermaid -->
<script src="//unpkg.com/mermaid/dist/mermaid.js"></script>
<script src="//unpkg.com/docsify-mermaid@latest/dist/docsify-mermaid.js"></script>
<script>mermaid.initialize({ startOnLoad: true });</script>
<!-- Plugin for embedding PDFs -->
<script src="//cdnjs.cloudflare.com/ajax/libs/pdfobject/2.1.1/pdfobject.min.js"></script>
<script src="//unpkg.com/docsify-pdf-embed-plugin/src/docsify-pdf-embed.js"></script>
<!-- Plugins to format and copy code -->
<script src="//cdn.jsdelivr.net/npm/docsify-copy-code@2"></script>
<script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-bash.min.js"></script>
<script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-git.min.js"></script>
<script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-yaml.min.js"></script>
<script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-json.min.js"></script>
<script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-python.min.js"></script>
<script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-sql.min.js"></script>
</body>
</html>
{{ cookiecutter.project_directory }}/docs/media/askanna-logo.svg 0 → 100644
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